actionGETv1.0.0
get_findInteractions
findInteractionsFind interactions defined in WikiPathways pathways.
actionGETv1.0.0
get_findPathwaysByLiterature
findPathwaysByLiterature
actionGETv1.0.0
get_findPathwaysByText
findPathwaysByText
actionGETv1.0.0
get_findPathwaysByXref
findPathwaysByXref
actionGETv1.0.0
get_getColoredPathway
getColoredPathwayGet a colored image version of the pathway.
actionGETv1.0.0
get_getCurationTagHistory
getCurationTagHistory
actionGETv1.0.0
get_getCurationTags
getCurationTagsGet all curation tags for the given tag name. Use this method if you want to find all pathways that are tagged with a specific curation tag.
actionGETv1.0.0
get_getCurationTagsByName
getCurationTagsByNameGet all curation tags for the given tag name. Use this method if you want to find all pathways that are tagged with a specific curation tag.
actionGETv1.0.0
get_getOntologyTermsByPathway
getOntologyTermsByPathway
actionGETv1.0.0
get_getPathway
getPathway
actionGETv1.0.0
get_getPathwayAs
getPathwayAsDownload a pathway in the specified file format.
actionGETv1.0.0
get_getPathwayHistory
getPathwayHistoryGet the revision history of a pathway.
actionGETv1.0.0
get_getPathwayInfo
getPathwayInfoGet some general info about the pathway, such as the name, species, without downloading the GPML.
actionGETv1.0.0
get_getPathwaysByOntologyTerm
getPathwaysByOntologyTerm
actionGETv1.0.0
get_getPathwaysByParentOntologyTerm
getPathwaysByParentOntologyTerm
actionGETv1.0.0
get_getRecentChanges
getRecentChangesGet the recently changed pathways.<br>Note: the recent changes table only retains items for a limited time (2 months), so there is no guarantee that you will get all changes when the timestamp points to a date that is more than 2 months in the past.
actionGETv1.0.0
get_getUserByOrcid
getUserByOrcid
actionGETv1.0.0
get_getXrefList
getXrefList
actionGETv1.0.0
get_listOrganisms
listOrganisms
actionGETv1.0.0
get_listPathways
listPathways
actionGETv1.0.0
get_login
loginStart a logged in session, using an existing WikiPathways account. This function will return an authentication code that can be used to excecute methods that need authentication (e.g. updatePathway).
actionGETv1.0.0
get_removeCurationTag
removeCurationTagRemove a curation tag from a pathway.
actionGETv1.0.0
get_removeOntologyTag
removeOntologyTag
actionGETv1.0.0
get_saveCurationTag
saveCurationTag
actionGETv1.0.0
get_saveOntologyTag
saveOntologyTag
actionGETv1.0.0
get_updatePathway
updatePathwayUpdate a pathway on the wiki with the given GPML code.<br>Note: To create/modify pathways via the web service, you need to have an account with web service write permissions. Please contact us to request write access for the web service.
actionPOSTv1.0.0
post_createPathway
createPathwayCreate a new pathway on the wiki with the given GPML code.<br>Note: To create/modify pathways via the web service, you need to have an account with web service write permissions. Please contact us to request write access for the web service.
Beyond the catalog
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Point swirls add at an OpenAPI or GraphQL spec. Typed actions for any API you hold credentials for, today.
acme · integrations
terminal
~/acme $swirls add linear
✓ 12 typed actions · scopes and schemas included
~/acme $swirls add https://api.acme.dev/openapi.json
◆ Fetched spec · 38 operations
✓ 6 typed actions · generated from spec