643 matches
100 actions
BioLink
100 actions
- All relations used plus count of associationsGETv1.0.0
- All relations used plus count of associationsGETv1.0.0
- Annotate a given content using SciGraph annotator and get all entities from contentGETv1.0.0
- Annotate a given text using SciGraph annotatorGETv1.0.0
- Compare a reference profile vs one or more profilesPOSTv1.0.0
- Compare a reference profile vs one profilesGETv1.0.0
- Creates a new variant setPOSTv1.0.0
- Deletes variant setDELETEv1.0.0
- Extract a subgraph from an ontologyGETv1.0.0
- Extract a subgraph from an ontologyPOSTv1.0.0
- Extract a subgraph from an ontology termGETv1.0.0
- Fetches a map from CURIEs/IDs to labelsGETv1.0.0
- Fetches a map from CURIEs/IDs to labelsGETv1.0.0
- Fetches a map from CURIEs/IDs to labelsPOSTv1.0.0
- For a given gene(s), summarize its annotations over a defined set of slimGETv1.0.0
- For a given gene(s), summarize its annotations over a defined set of slimGETv1.0.0
- For a given gene(s), summarize its annotations over a defined set of slimGETv1.0.0
- Get annotation scoreGETv1.0.0
- Get annotation scorePOSTv1.0.0
- Get metadata for all datasets from SciGraphGETv1.0.0
- Get pairwise similarityGETv1.0.0
- Match a patient to diseases based on their phenotypesPOSTv1.0.0
- Match a patient to fruit fly genes based on similar phenotypesPOSTv1.0.0
- Match a patient to mouse genes based on similar phenotypesPOSTv1.0.0
- Match a patient to nematode genes based on similar phenotypesPOSTv1.0.0
- Match a patient to zebrafish genes based on similar phenotypesPOSTv1.0.0
- Placeholder - use direct SPARQL endpoint for nowGETv1.0.0
- Placeholder - use OWLery for nowGETv1.0.0
- Relation usage count for all subj x obj category combinationsGETv1.0.0
- Relation usage count for all subj x obj category combinations, showing labelGETv1.0.0
- Returns a complete modelGETv1.0.0
- Returns a graph nodeGETv1.0.0
- Returns a variant setGETv1.0.0
- Returns anatomical entities associated with a geneGETv1.0.0
- Returns annotations associated to a function termGETv1.0.0
- Returns associations connecting two entitiesGETv1.0.0
- Returns associations to models of the diseaseGETv1.0.0
- Returns associations to models of the disease constrained by taxonGETv1.0.0
- Returns cases associated with a diseaseGETv1.0.0
- Returns cases associated with a geneGETv1.0.0
- Returns compact associations for a given input setGETv1.0.0
- Returns contracted URIGETv1.0.0
- Returns diseases associated with a caseGETv1.0.0
- Returns diseases associated with geneGETv1.0.0
- Returns edges emanating from a given nodeGETv1.0.0
- Returns evidence as a association_results object given an associationGETv1.0.0
- Returns evidence graph object for a given associationGETv1.0.0
- Returns expanded URIGETv1.0.0
- Returns expression events for a geneGETv1.0.0
- Returns function associations for a geneGETv1.0.0
- Returns gene IDs for all genes associated with a given anatomy, filtered by taxonGETv1.0.0
- Returns genes associated to a GO termGETv1.0.0
- Returns genes associated with a diseaseGETv1.0.0
- Returns genes associated with a given anatomyGETv1.0.0
- Returns genotypes associated with a caseGETv1.0.0
- Returns genotypes associated with a diseaseGETv1.0.0
- Returns graph of an ontology termGETv1.0.0
- Returns homology associations for a given input set of genesGETv1.0.0
- Returns information content (IC) for a set of relevant ontology classesGETv1.0.0
- Returns list of all contributors across all modelsGETv1.0.0
- Returns list of all instancesGETv1.0.0
- Returns list of ALL modelsGETv1.0.0
- Returns list of all properties used across all modelsGETv1.0.0
- Returns list of matchesGETv1.0.0
- Returns list of matchesGETv1.0.0
- Returns list of matchesGETv1.0.0
- Returns list of matchesGETv1.0.0
- Returns list of matchesGETv1.0.0
- Returns list of matching associations between a given subject and object categoryGETv1.0.0
- Returns list of matching associations for a given subject categoryGETv1.0.0
- Returns list of matching associations of a given typeGETv1.0.0
- Returns list of matching associations pointing to a given object (target)GETv1.0.0
- Returns list of matching associations starting from a given subject (source)GETv1.0.0
- Returns list of matching concepts or entities using lexical searchGETv1.0.0
- Returns list of modelsGETv1.0.0
- Returns list of modelsGETv1.0.0
- Returns list of models matching queryGETv1.0.0
- Returns list of prefixesGETv1.0.0
- Returns list of variant setsGETv1.0.0
- Returns list of variant sets from a specified time periodGETv1.0.0
- Returns list property-values for all modelsGETv1.0.0
- Returns meta data of an ontology subset (slim)GETv1.0.0
- Returns meta data of an ontology termGETv1.0.0
- Returns models associated with a caseGETv1.0.0
- Returns pathways associated with a diseaseGETv1.0.0
- Returns phenotypes associated with a caseGETv1.0.0
- Returns phenotypes associated with diseaseGETv1.0.0
- Returns publications associated to a GO termGETv1.0.0
- Returns publications associated with a diseaseGETv1.0.0
- Returns subsets (slims) associated to an ontology termGETv1.0.0
- Returns substances associated with a diseaseGETv1.0.0
- Returns taxons associated to a GO termGETv1.0.0
- Returns the ancestor ontology terms shared by two ontology termsGETv1.0.0
- Returns the association with a given identifierGETv1.0.0
- Returns variants associated with a caseGETv1.0.0
- Returns variants associated with a diseaseGETv1.0.0
- Search for phenotypically similar diseases or model genesGETv1.0.0
- Summary statistics for objects associatedGETv1.0.0
- TODO Graph object spanning all entitiesGETv1.0.0
- TODO maps a list of identifiers from a source to a targetGETv1.0.0
Other/BioLink
Annotate a given content using SciGraph annotator and get all entities from content
v1.0.0Input
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{
"type": "object",
"properties": {
"content": {
"type": "string"
},
"exclude_category": {
"type": "array",
"items": {
"type": "string"
}
},
"include_abbreviation": {
"type": "boolean"
},
"include_acronym": {
"type": "boolean"
},
"include_category": {
"type": "array",
"items": {
"type": "string"
}
},
"include_numbers": {
"type": "boolean"
},
"longest_only": {
"type": "boolean"
},
"min_length": {
"type": "string"
}
},
"additionalProperties": false
}Output
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{
"type": "object",
"properties": {
"content": {
"type": "string"
},
"spans": {
"type": "array",
"description": "A marked-up span of text",
"items": {
"type": "object",
"properties": {
"end": {
"type": "integer",
"description": "end of span text relative to content"
},
"start": {
"type": "integer",
"description": "start of span text relative to content"
},
"text": {
"type": "string",
"description": "span text"
},
"token": {
"type": "array",
"description": "A token or entity extracted from the span text",
"items": {
"type": "object",
"properties": {
"categories": {
"type": "array",
"description": "entity categories",
"items": {
"type": "string"
}
},
"id": {
"type": "string",
"description": "The CURIE for the entity or token"
},
"terms": {
"type": "array",
"description": "terms",
"items": {
"type": "string"
}
}
}
}
}
}
}
}
}
}