This service returns columns from the MAF generated by MutSig. Results may be filtered by gene, cohort, tool, or barcode, but at least one gene OR barcode OR cohort must be given. By default a subset consisting of the most commonly used columns will be returned, but that can be modified with the column parameter. Specifying 'all' in this parameter is a convenient way to return every column of the respective MAF, and has precedence over any any other column selection expression. The complete list of column names that may be specified is . For more information on the mutation data, and how it is processed by Firehose, please consult the .
643 matches
30 actions
FireBrowse Beta
30 actions
- Given a TCGA barcode, return its short letter sample type code.GETv1.0.0
- Obtain identities of TCGA consortium member centers.GETv1.0.0
- Obtain identities of tissue source sites in TCGA.GETv1.0.0
- Retrieve aggregated analysis features table.GETv1.0.0
- Retrieve all data by genes Gistic2 results.GETv1.0.0
- Retrieve all thresholded by genes Gistic2 results.GETv1.0.0
- Retrieve CDEs normalized by Firehose and selected for analyses.GETv1.0.0
- Retrieve dates of all GDAC Firehose stddata & analyses runs that have been ingested into FireBrowse.GETv1.0.0
- Retrieve focal data by genes Gistic2 results.GETv1.0.0
- Retrieve Gistic2 significantly amplified genes results.GETv1.0.0
- Retrieve Gistic2 significantly deleted genes results.GETv1.0.0
- Retrieve links to summary reports from Firehose analysis runs.GETv1.0.0
- Retrieve list of all TCGA patients.GETv1.0.0
- Retrieve miRSeq data.GETv1.0.0
- Retrieve mRNASeq data.GETv1.0.0
- Retrieve MutSig final analysis MAF.GETv1.0.0
- Retrieve names of all columns in the mutation annotation files (MAFs) served by FireBrowse.GETv1.0.0
- Retrieve names of all TCGA clinical data elements (CDEs).GETv1.0.0
- Retrieve names of CDEs normalized by Firehose and selected for analyses.GETv1.0.0
- Retrieve sample counts.GETv1.0.0
- Retrieve Significantly Mutated Genes (SMG).GETv1.0.0
- Retrieve standard data archives.GETv1.0.0
- Retrieve TCGA CDEs verbatim, i.e. not normalized by Firehose.GETv1.0.0
- Return all TCGA sample type codes, both numeric and symbolic.GETv1.0.0
- Returns RNASeq expression quartiles, e.g. suitable for drawing a boxplot.GETv1.0.0
- Simple way to discern whether API server is up and runningGETv1.0.0
- Translate from numeric to symbolic TCGA sample codes.GETv1.0.0
- Translate from symbolic to numeric TCGA sample codes.GETv1.0.0
- Translate TCGA cohort abbreviations to full disease names.GETv1.0.0
- Translate TCGA platform codes to full platform names.GETv1.0.0
Other/FireBrowse Beta
Retrieve MutSig final analysis MAF.
v1.0.0Input
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{
"type": "object",
"properties": {
"cohort": {
"type": "string"
},
"column": {
"type": "string"
},
"format": {
"type": "string"
},
"gene": {
"type": "string"
},
"page": {
"type": "string"
},
"page_size": {
"type": "string"
},
"sort_by": {
"type": "string"
},
"tcga_participant_barcode": {
"type": "string"
},
"tool": {
"type": "string"
}
},
"additionalProperties": false
}Output
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{
"type": "object",
"additionalProperties": true
}